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flowCut

Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis

Bioconductor version: 3.23 · Package version: 1.22.0

Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowCut")

Details

MaintainerJustin Meskas <justinmeskas@gmail.com>
AuthorJustin Meskas [cre, aut], Sherrie Wang [aut]
LicenseArtistic-2.0
Downloads rank536
Source branchRELEASE_3_23
biocViewsCellBasedAssays, FlowCytometry, Preprocessing, QualityControl, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageflowCut_1.22.0.tar.gz
Windows binary (x86_64)flowCut_1.22.0.zip
macOS binary (arm64)flowCut_1.22.0.tgz
macOS binary (x86_64)flowCut_1.22.0.tgz
Dependencies

Depends: R (>= 3.4), flowCore

Imports: flowDensity (>= 1.13.1), Cairo, e1071, grDevices, graphics, stats, methods

Suggests: RUnit, BiocGenerics, knitr, markdown, rmarkdown