eiR
Accelerated similarity searching of small molecules
Bioconductor version: 3.23 · Package version: 1.52.0
The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("eiR")Details
| Maintainer | Thomas Girke <thomas.girke@ucr.edu> |
| Author | Kevin Horan, Yiqun Cao and Tyler Backman |
| License | Artistic-2.0 |
| URL | https://github.com/girke-lab/eiR |
| Downloads rank | 499 |
| Source branch | RELEASE_3_23 |
| biocViews | BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | eiR_1.52.0.tar.gz |
| Windows binary (x86_64) | eiR_1.52.0.zip |
| macOS binary (arm64) | eiR_1.52.0.tgz |
| macOS binary (x86_64) | eiR_1.52.0.tgz |
Dependencies
Depends: R (>= 2.10.0), ChemmineR (>= 2.15.15), methods, DBI
Imports: snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, RcppAnnoy (>= 0.0.9)
Suggests: BiocStyle, knitcitations, knitr, knitrBootstrap, rmarkdown, RSQLite, codetools