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divergence

Divergence: Functionality for assessing omics data by divergence with respect to a baseline

Bioconductor version: 3.23 · Package version: 1.28.0

This package provides functionality for performing divergence analysis as presented in Dinalankara et al, "Digitizing omics profiles by divergence from a baseline", PANS 2018. This allows the user to simplify high dimensional omics data into a binary or ternary format which encapsulates how the data is divergent from a specified baseline group with the same univariate or multivariate features.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("divergence")

Details

MaintainerWikum Dinalankara <wdd4001@med.cornell.edu>, Luigi Marchionni <marchion@jhu.edu>
AuthorWikum Dinalankara <wdd4001@med.cornell.edu>, Luigi Marchionni <marchion@jhu.edu>, Qian Ke <qke1@jhu.edu>
LicenseGPL-2
Downloads rank389
Source branchRELEASE_3_23
biocViewsSoftware, StatisticalMethod

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagedivergence_1.28.0.tar.gz
Windows binary (x86_64)divergence_1.28.0.zip
macOS binary (arm64)divergence_1.28.0.tgz
macOS binary (x86_64)divergence_1.28.0.tgz
Dependencies

Depends: R (>= 3.6), SummarizedExperiment

Suggests: knitr, rmarkdown