crisprViz

Visualization Functions for CRISPR gRNAs

Bioconductor version: 3.23 · Package version: 1.14.0

Provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crisprViz")

Details

Maintainer	Jean-Philippe Fortin <fortin946@gmail.com>
Author	Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]
License	MIT + file LICENSE
URL	https://github.com/crisprVerse/crisprViz
Bug Reports	https://github.com/crisprVerse/crisprViz/issues
Downloads rank	506
Source branch	RELEASE_3_23
biocViews	CRISPR, FunctionalGenomics, GeneTarget, Software

Documentation

Introduction to crisprViz

Download

Follow the installation instructions to use this package in your R session.

Source package	crisprViz_1.14.0.tar.gz
Windows binary (x86_64)	crisprViz_1.14.0.zip
macOS binary (arm64)	crisprViz_1.14.0.tgz
macOS binary (x86_64)	crisprViz_1.14.0.tgz

Dependencies

Depends: R (>= 4.2.0), crisprBase (>= 0.99.15), crisprDesign (>= 0.99.77)

Imports: BiocGenerics, Biostrings, BSgenome, Seqinfo, GenomicFeatures, GenomicRanges, grDevices, Gviz, IRanges, methods, S4Vectors, txdbmaker

Suggests: AnnotationHub, BiocStyle, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, rtracklayer, testthat, utils

Reverse dependencies

Imports Me (2): crisprShiny, crisprVerse