compEpiTools
Tools for computational epigenomics
Bioconductor version: 3.23 · Package version: 1.46.0
Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("compEpiTools")Details
| Maintainer | Mattia Furlan <mattia.furlan@iit.it> |
| Author | Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre] |
| License | GPL |
| Downloads rank | 652 |
| Source branch | RELEASE_3_23 |
| biocViews | Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | compEpiTools_1.46.0.tar.gz |
| Windows binary (x86_64) | compEpiTools_1.46.0.zip |
| macOS binary (arm64) | compEpiTools_1.46.0.tgz |
| macOS binary (x86_64) | compEpiTools_1.46.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, topGO, GenomicRanges
Imports: AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, Seqinfo
Suggests: BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer