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chromDraw

chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

Bioconductor version: 3.23 · Package version: 2.42.0

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chromDraw")

Details

MaintainerJan Janecka <jan.janecka@ceitec.muni.cz>
AuthorJan Janecka, Ing., Mgr. CEITEC Masaryk University
LicenseGPL-3
URLwww.plantcytogenomics.org/chromDraw
System RequirementsRtools (>= 3.1)
Downloads rank418
Source branchRELEASE_3_23
biocViewsSoftware

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagechromDraw_2.42.0.tar.gz
macOS binary (arm64)chromDraw_2.42.0.tgz
macOS binary (x86_64)chromDraw_2.42.0.tgz
Dependencies

Depends: R (>= 3.0.0)

Imports: Rcpp (>= 0.11.1), GenomicRanges (>= 1.17.46)

LinkingTo: Rcpp