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cellbaseR

Querying annotation data from the high performance Cellbase web

Bioconductor version: 3.23 · Package version: 1.36.0

This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellbaseR")

Details

MaintainerMohammed OE Abdallah <melsiddieg@gmail.com>
AuthorMohammed OE Abdallah
LicenseApache License (== 2.0)
URLhttps://github.com/melsiddieg/cellbaseR
Downloads rank523
Source branchRELEASE_3_23
biocViewsAnnotation, Software, VariantAnnotation

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagecellbaseR_1.36.0.tar.gz
Windows binary (x86_64)cellbaseR_1.36.0.zip
macOS binary (arm64)cellbaseR_1.36.0.tgz
macOS binary (x86_64)cellbaseR_1.36.0.tgz
Dependencies

Depends: R (>= 3.4)

Imports: methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel

Suggests: BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation