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calm

Covariate Assisted Large-scale Multiple testing

Bioconductor version: 3.23 · Package version: 1.26.0

Statistical methods for multiple testing with covariate information. Traditional multiple testing methods only consider a list of test statistics, such as p-values. Our methods incorporate the auxiliary information, such as the lengths of gene coding regions or the minor allele frequencies of SNPs, to improve power.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("calm")

Details

MaintainerKun Liang <kun.liang@uwaterloo.ca>
AuthorKun Liang [aut, cre]
LicenseGPL (>=2)
Bug Reportshttps://github.com/k22liang/calm/issues
Downloads rank289
Source branchRELEASE_3_23
biocViewsBayesian, DifferentialExpression, GeneExpression, Genetics, ImmunoOncology, Metabolomics, Microarray, MultipleComparison, Proteomics, RNASeq, Regression, Sequencing, Software, Transcriptomics

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagecalm_1.26.0.tar.gz
Windows binary (x86_64)calm_1.26.0.zip
macOS binary (arm64)calm_1.26.0.tgz
macOS binary (x86_64)calm_1.26.0.tgz
Dependencies

Imports: mgcv, stats, graphics

Suggests: knitr, rmarkdown