bioassayR
Cross-target analysis of small molecule bioactivity
Bioconductor version: 3.23 · Package version: 1.50.0
bioassayR is a computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bioassayR") Details
| Maintainer | Thomas Girke <tgirke@citrus.ucr.edu> |
| Author | Tyler Backman, Ronly Schlenk, Thomas Girke |
| License | Artistic-2.0 |
| URL | https://github.com/girke-lab/bioassayR |
| Bug Reports | https://github.com/girke-lab/bioassayR/issues |
| Downloads rank | 529 |
| Source branch | RELEASE_3_23 |
| biocViews | Bioinformatics, CellBasedAssays, DataImport, ImmunoOncology, Infrastructure, Metabolomics, MicrotitrePlateAssay, Proteomics, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | bioassayR_1.50.0.tar.gz |
| Windows binary (x86_64) | bioassayR_1.50.0.zip |
| macOS binary (x86_64) | bioassayR_1.50.0.tgz |
Dependencies
Depends: R (>= 3.5.0), DBI (>= 0.3.1), RSQLite (>= 1.0.0), methods, Matrix, rjson, BiocGenerics (>= 0.13.8)
Suggests: BiocStyle, RCurl, biomaRt, knitr, knitcitations, knitrBootstrap, testthat, ggplot2, rmarkdown