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bioassayR

Cross-target analysis of small molecule bioactivity

Bioconductor version: 3.23 · Package version: 1.50.0

bioassayR is a computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bioassayR")

Details

MaintainerThomas Girke <tgirke@citrus.ucr.edu>
AuthorTyler Backman, Ronly Schlenk, Thomas Girke
LicenseArtistic-2.0
URLhttps://github.com/girke-lab/bioassayR
Bug Reportshttps://github.com/girke-lab/bioassayR/issues
Downloads rank529
Source branchRELEASE_3_23
biocViewsBioinformatics, CellBasedAssays, DataImport, ImmunoOncology, Infrastructure, Metabolomics, MicrotitrePlateAssay, Proteomics, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagebioassayR_1.50.0.tar.gz
Windows binary (x86_64)bioassayR_1.50.0.zip
macOS binary (x86_64)bioassayR_1.50.0.tgz
Dependencies

Depends: R (>= 3.5.0), DBI (>= 0.3.1), RSQLite (>= 1.0.0), methods, Matrix, rjson, BiocGenerics (>= 0.13.8)

Imports: XML, ChemmineR

Suggests: BiocStyle, RCurl, biomaRt, knitr, knitcitations, knitrBootstrap, testthat, ggplot2, rmarkdown