atSNP
Affinity test for identifying regulatory SNPs
Bioconductor version: 3.23 · Package version: 1.28.0
atSNP performs affinity tests of motif matches with the SNP or the reference genomes and SNP-led changes in motif matches.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("atSNP")Details
| Maintainer | Sunyoung Shin <sunyoung.shin@utdallas.edu> |
| Author | Chandler Zuo [aut], Sunyoung Shin [aut, cre], Sunduz Keles [aut] |
| License | GPL-2 |
| URL | https://github.com/sunyoungshin/atSNP |
| Bug Reports | https://github.com/sunyoungshin/atSNP/issues |
| Downloads rank | 509 |
| Source branch | RELEASE_3_23 |
| biocViews | ChIPSeq, GenomeAnnotation, MotifAnnotation, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | atSNP_1.28.0.tar.gz |
| Windows binary (x86_64) | atSNP_1.28.0.zip |
| macOS binary (arm64) | atSNP_1.28.0.tgz |
| macOS binary (x86_64) | atSNP_1.28.0.tgz |
Dependencies
Depends: R (>= 3.6)
Imports: BSgenome, BiocFileCache, BiocParallel, Rcpp, data.table, ggplot2, grDevices, graphics, grid, motifStack, rappdirs, stats, testthat, utils, lifecycle
LinkingTo: Rcpp