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alabaster.files

Wrappers to Save Common File Formats

Bioconductor version: 3.23 · Package version: 1.10.0

Save common bioinformatics file formats within the alabaster framework. This includes BAM, BED, VCF, bigWig, bigBed, FASTQ, FASTA and so on. We save and load additional metadata for each file, and we support linkage between each file and its corresponding index.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.files")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre]
LicenseMIT + file LICENSE
Downloads rank321
Source branchRELEASE_3_23
biocViewsDataImport, DataRepresentation, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagealabaster.files_1.10.0.tar.gz
Windows binary (x86_64)alabaster.files_1.10.0.zip
macOS binary (arm64)alabaster.files_1.10.0.tgz
macOS binary (x86_64)alabaster.files_1.10.0.tgz
Dependencies

Depends: alabaster.base

Imports: methods, S4Vectors, BiocGenerics, Rsamtools

Suggests: BiocStyle, rmarkdown, knitr, testthat, VariantAnnotation, rtracklayer, Biostrings