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ScaledMatrix

Creating a DelayedMatrix of Scaled and Centered Values

Bioconductor version: 3.23 · Package version: 1.20.0

Provides delayed computation of a matrix of scaled and centered values. The result is equivalent to using the scale() function but avoids explicit realization of a dense matrix during block processing. This permits greater efficiency in common operations, most notably matrix multiplication.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ScaledMatrix")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre, cph]
LicenseGPL-3
URLhttps://github.com/LTLA/ScaledMatrix
Bug Reportshttps://github.com/LTLA/ScaledMatrix/issues
Downloads rank16457
Source branchRELEASE_3_23
biocViewsDataRepresentation, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageScaledMatrix_1.20.0.tar.gz
Windows binary (x86_64)ScaledMatrix_1.20.0.zip
macOS binary (arm64)ScaledMatrix_1.20.0.tgz
macOS binary (x86_64)ScaledMatrix_1.20.0.tgz
Dependencies

Imports: methods, Matrix, S4Vectors, DelayedArray

Suggests: testthat, BiocStyle, knitr, rmarkdown, BiocSingular, DelayedMatrixStats

Reverse dependencies

Imports Me (4): batchelor, BiocSingular, mumosa, scPCA

Suggests Me (1): scran