SEtools
SEtools: tools for working with SummarizedExperiment
Bioconductor version: 3.23 · Package version: 1.26.0
This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SEtools")Details
| Maintainer | Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch> |
| Author | Pierre-Luc Germain [cre, aut] (ORCID: <https://orcid.org/0000-0003-3418-4218>) |
| License | GPL |
| Bug Reports | https://github.com/plger/SEtools |
| Downloads rank | 442 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneExpression, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | SEtools_1.26.0.tar.gz |
| Windows binary (x86_64) | SEtools_1.26.0.zip |
| macOS binary (arm64) | SEtools_1.26.0.tgz |
| macOS binary (x86_64) | SEtools_1.26.0.tgz |
Dependencies
Depends: R (>= 4.0), SummarizedExperiment, sechm
Imports: BiocParallel, Matrix, DESeq2, S4Vectors, data.table, edgeR, openxlsx, pheatmap, stats, circlize, methods, sva