RCM
Fit row-column association models with the negative binomial distribution for the microbiome
Bioconductor version: 3.23 · Package version: 1.28.0
Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis. In addition, diagnostic plot to detect lack of fit are available.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RCM")Details
| Maintainer | Stijn Hawinkel <stijn.hawinkel@psb.ugent.be> |
| Author | Stijn Hawinkel [cre, aut] (ORCID: <https://orcid.org/0000-0002-4501-5180>) |
| License | GPL-2 |
| URL | https://bioconductor.org/packages/release/bioc/vignettes/RCM/inst/doc/RCMvignette.html/ |
| Bug Reports | https://github.com/CenterForStatistics-UGent/RCM/issues |
| Downloads rank | 489 |
| Source branch | RELEASE_3_23 |
| biocViews | DimensionReduction, Metagenomics, Microbiome, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RCM_1.28.0.tar.gz |
| Windows binary (x86_64) | RCM_1.28.0.zip |
| macOS binary (arm64) | RCM_1.28.0.tgz |
| macOS binary (x86_64) | RCM_1.28.0.tgz |