R4RNA
An R package for RNA visualization and analysis
Bioconductor version: 3.23 · Package version: 1.40.0
A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("R4RNA")Details
| Maintainer | Daniel Lai <jujubix@cs.ubc.ca> |
| Author | Daniel Lai, Irmtraud Meyer <irmtraud.meyer@cantab.net> |
| License | GPL-3 |
| URL | http://www.e-rna.org/r-chie/ |
| Downloads rank | 1103 |
| Source branch | RELEASE_3_23 |
| biocViews | Alignment, DataImport, DataRepresentation, MultipleComparison, MultipleSequenceAlignment, Preprocessing, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | R4RNA_1.40.0.tar.gz |
| Windows binary (x86_64) | R4RNA_1.40.0.zip |
| macOS binary (arm64) | R4RNA_1.40.0.tgz |
| macOS binary (x86_64) | R4RNA_1.40.0.tgz |
Dependencies
Depends: R (>= 3.2.0), Biostrings (>= 2.38.0)