QTLExperiment

S4 classes for QTL summary statistics and metadata

Bioconductor version: 3.23 · Package version: 2.4.0

QLTExperiment defines an S4 class for storing and manipulating summary statistics from QTL mapping experiments in one or more states. It is based on the 'SummarizedExperiment' class and contains functions for creating, merging, and subsetting objects. 'QTLExperiment' also stores experiment metadata and has checks in place to ensure that transformations apply correctly.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("QTLExperiment")

Details

Maintainer	Amelia Dunstone <amelia.dunstone@svi.edu.au>
Author	Christina Del Azodi [aut], Davis McCarthy [ctb], Amelia Dunstone [cre, aut] (ORCID: <https://orcid.org/0009-0009-6426-1529>)
License	GPL-3
URL	https://github.com/dunstone-a/QTLExperiment
Bug Reports	https://github.com/dunstone-a/QTLExperiment/issues
Downloads rank	344
Source branch	RELEASE_3_23
biocViews	DataImport, DataRepresentation, FunctionalGenomics, Infrastructure, SNP, Sequencing, Software

Documentation

An introduction to the QTLExperiment class

Download

Follow the installation instructions to use this package in your R session.

Source package	QTLExperiment_2.4.0.tar.gz
Windows binary (x86_64)	QTLExperiment_2.4.0.zip
macOS binary (arm64)	QTLExperiment_2.4.0.tgz
macOS binary (x86_64)	QTLExperiment_2.4.0.tgz

Dependencies

Depends: SummarizedExperiment

Imports: methods, rlang, checkmate, dplyr, collapse, vroom, tidyr, tibble, utils, stats, ashr, S4Vectors, BiocGenerics

Suggests: testthat, BiocStyle, knitr, rmarkdown, covr

Reverse dependencies

Depends On Me (1): multistateQTL