PAIRADISE
PAIRADISE: Paired analysis of differential isoform expression
Bioconductor version: 3.23 · Package version: 1.28.0
This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PAIRADISE")Details
| Maintainer | Qiang Hu <Qiang.Hu@roswellpark.org>, Levon Demirdjian <levondem@ucla.edu> |
| Author | Levon Demirdjian, Ying Nian Wu, Yi Xing |
| License | MIT + file LICENSE |
| Downloads rank | 452 |
| Source branch | RELEASE_3_23 |
| biocViews | AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | PAIRADISE_1.28.0.tar.gz |
| Windows binary (x86_64) | PAIRADISE_1.28.0.zip |
| macOS binary (arm64) | PAIRADISE_1.28.0.tgz |
| macOS binary (x86_64) | PAIRADISE_1.28.0.tgz |
Dependencies
Depends: R (>= 3.6), nloptr
Imports: SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel