OncoScore

A tool to identify potentially oncogenic genes

Bioconductor version: 3.23 · Package version: 1.40.0

OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OncoScore")

Details

Maintainer	Luca De Sano <luca.desano@gmail.com>
Author	Luca De Sano [cre, aut] (ORCID: <https://orcid.org/0000-0002-9618-3774>), Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut] (ORCID: <https://orcid.org/0000-0002-6087-2666>), Roberta Spinelli [ctb]
License	file LICENSE
URL	https://github.com/danro9685/OncoScore
Bug Reports	https://github.com/danro9685/OncoScore
Downloads rank	469
Source branch	RELEASE_3_23
biocViews	BiomedicalInformatics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source package	OncoScore_1.40.0.tar.gz
Windows binary (x86_64)	OncoScore_1.40.0.zip
macOS binary (arm64)	OncoScore_1.40.0.tgz
macOS binary (x86_64)	OncoScore_1.40.0.tgz

Dependencies

Depends: R (>= 4.1.0)

Imports: biomaRt, grDevices, graphics, utils, methods

Suggests: BiocGenerics, BiocStyle, knitr, testthat