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OCplus

Operating characteristics plus sample size and local fdr for microarray experiments

Bioconductor version: 3.23 · Package version: 1.86.0

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OCplus")

Details

MaintainerAlexander Ploner <Alexander.Ploner@ki.se>
AuthorYudi Pawitan <Yudi.Pawitan@ki.se> and Alexander Ploner <Alexander.Ploner@ki.se>
LicenseLGPL
Downloads rank624
Source branchRELEASE_3_23
biocViewsDifferentialExpression, Microarray, MultipleComparison, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageOCplus_1.86.0.tar.gz
Windows binary (x86_64)OCplus_1.86.0.zip
macOS binary (arm64)OCplus_1.86.0.tgz
macOS binary (x86_64)OCplus_1.86.0.tgz
Dependencies

Depends: R (>= 2.1.0)

Imports: multtest (>= 1.7.3), graphics, grDevices, stats, interp