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MetMashR

Metabolite Mashing with R

Bioconductor version: 3.23 · Package version: 1.6.0

A package to merge, filter sort, organise and otherwise mash together metabolite annotation tables. Metabolite annotations can be imported from multiple sources (software) and combined using workflow steps based on S4 class templates derived from the `struct` package. Other modular workflow steps such as filtering, merging, splitting, normalisation and rest-api queries are included.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetMashR")

Details

MaintainerGavin Rhys Lloyd <g.r.lloyd@bham.ac.uk>
AuthorGavin Rhys Lloyd [aut, cre] (ORCID: <https://orcid.org/0000-0001-7989-6695>), Ralf Johannes Maria Weber [aut]
LicenseGPL-3
URLhttps://computational-metabolomics.github.io/MetMashR/
Bug Reportshttps://github.com/computational-metabolomics/MetMashR/issues
Downloads rank312
Source branchRELEASE_3_23
biocViewsKEGG, Metabolomics, Software, WorkflowStep

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageMetMashR_1.6.0.tar.gz
Windows binary (x86_64)MetMashR_1.6.0.zip
macOS binary (arm64)MetMashR_1.6.0.tgz
macOS binary (x86_64)MetMashR_1.6.0.tgz
Dependencies

Depends: R (>= 4.3.0), struct

Imports: dplyr, methods, httr, scales, ggthemes, utils, rlang, stats, ggplot2

Suggests: covr, httptest, knitr, rmarkdown, testthat (>= 3.0.0), rgoslin, DT, RSQLite, CompoundDb, BiocStyle, BiocFileCache, msPurity, rsvg, metabolomicsWorkbenchR, KEGGREST, plyr, magick, structToolbox, ggVennDiagram, patchwork, XML, GO.db, tidytext, tidyr, tidyselect, ComplexUpset, jsonlite, openxlsx, ggplotify, cowplot