MDTS
Detection of de novo deletion in targeted sequencing trios
Bioconductor version: 3.23 · Package version: 1.32.0
A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MDTS")Details
| Maintainer | Jack M.. Fu <jmfu@jhsph.edu> |
| Author | Jack M.. Fu [aut, cre] |
| License | Artistic-2.0 |
| Downloads rank | 380 |
| Source branch | RELEASE_3_23 |
| biocViews | Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology |
Download
Follow the installation instructions to use this package in your R session.
| Source package | MDTS_1.32.0.tar.gz |
| Windows binary (x86_64) | MDTS_1.31.0.zip |
| macOS binary (arm64) | MDTS_1.32.0.tgz |
| macOS binary (x86_64) | MDTS_1.32.0.tgz |
Dependencies
Depends: R (>= 3.5.0)
Imports: GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr