LRDE
Differential Expression Analysis with Long Read RNA-Seq Data
Bioconductor version: 3.23 · Package version: 1.0.4
Provides hurdle negative binomial models for differential expression analysis with long-read RNA-Seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LRDE")Details
| Maintainer | Ziyang Liu <jacobleo773@gmail.com> |
| Author | Ziyang Liu [aut, cre] (ORCID: <https://orcid.org/0009-0004-2098-434X>), Hongxu Ding [aut, fnd], Xiaoxiao Sun [aut, fnd], Ziyuan Wang [aut, fnd] |
| License | MIT + file LICENSE |
| URL | https://github.com/ziyang773/LRDE |
| Bug Reports | https://github.com/ziyang773/LRDE/issues |
| Downloads rank | 145 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, GeneExpression, LongRead, RNASeq, Regression, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | LRDE_1.0.4.tar.gz |
| Windows binary (x86_64) | LRDE_0.99.6.zip |
| macOS binary (arm64) | LRDE_0.99.6.tgz |
| macOS binary (x86_64) | LRDE_0.99.6.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: stats, SummarizedExperiment
Suggests: BiocStyle, knitr, rmarkdown, BiocGenerics, testthat (>= 3.0.0)