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IWTomics

Interval-Wise Testing for Omics Data

Bioconductor version: 3.23 · Package version: 1.36.0

Implementation of the Interval-Wise Testing (IWT) for omics data. This inferential procedure tests for differences in "Omics" data between two groups of genomic regions (or between a group of genomic regions and a reference center of symmetry), and does not require fixing location and scale at the outset.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IWTomics")

Details

MaintainerMarzia A Cremona <mac78@psu.edu>
AuthorMarzia A Cremona, Alessia Pini, Francesca Chiaromonte, Simone Vantini
LicenseGPL (>=2)
Downloads rank484
Source branchRELEASE_3_23
biocViewsDataImport, DifferentialExpression, DifferentialMethylation, DifferentialPeakCalling, GenomeAnnotation, MultipleComparison, Software, StatisticalMethod

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageIWTomics_1.36.0.tar.gz
Windows binary (x86_64)IWTomics_1.36.0.zip
macOS binary (arm64)IWTomics_1.36.0.tgz
macOS binary (x86_64)IWTomics_1.36.0.tgz
Dependencies

Depends: R (>= 3.5.0), GenomicRanges

Imports: parallel, gtable, grid, graphics, methods, IRanges, KernSmooth, fda, S4Vectors, grDevices, stats, utils, tools

Suggests: XVector, knitr