IHW
Independent Hypothesis Weighting
Bioconductor version: 3.23 · Package version: 1.40.0
Independent hypothesis weighting (IHW) is a multiple testing procedure that increases power compared to the method of Benjamini and Hochberg by assigning data-driven weights to each hypothesis. The input to IHW is a two-column table of p-values and covariates. The covariate can be any continuous-valued or categorical variable that is thought to be informative on the statistical properties of each hypothesis test, while it is independent of the p-value under the null hypothesis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IHW") Details
| Maintainer | Nikos Ignatiadis <nikos.ignatiadis01@gmail.com> |
| Author | Nikos Ignatiadis [aut, cre], Wolfgang Huber [aut] |
| License | Artistic-2.0 |
| Downloads rank | 1549 |
| Source branch | RELEASE_3_23 |
| biocViews | ImmunoOncology, MultipleComparison, RNASeq, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | IHW_1.40.0.tar.gz |
| macOS binary (arm64) | IHW_1.40.0.tgz |
| macOS binary (x86_64) | IHW_1.40.0.tgz |
Dependencies
Depends: R (>= 3.3.0)
Imports: methods, slam, lpsymphony, fdrtool, BiocGenerics
Suggests: ggplot2, dplyr, gridExtra, scales, DESeq2, airway, testthat, Matrix, BiocStyle, knitr, rmarkdown, devtools
Reverse dependencies
Depends On Me (1): IHWpaper
Suggests Me (6): DEWSeq, DGEobj.utils, GRaNIE, metagenomeSeq, muscat, readyomics