HiTC
High Throughput Chromosome Conformation Capture analysis
Bioconductor version: 3.23 · Package version: 1.56.0
The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HiTC")Details
| Maintainer | Nicolas Servant <nicolas.servant@curie.fr> |
| Author | Nicolas Servant |
| License | Artistic-2.0 |
| Downloads rank | 791 |
| Source branch | RELEASE_3_23 |
| biocViews | HiC, HighThroughputSequencing, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | HiTC_1.56.0.tar.gz |
| Windows binary (x86_64) | HiTC_1.56.0.zip |
| macOS binary (arm64) | HiTC_1.56.0.tgz |
| macOS binary (x86_64) | HiTC_1.56.0.tgz |
Dependencies
Depends: R (>= 2.15.0), methods, IRanges, GenomicRanges
Imports: Biostrings, graphics, grDevices, rtracklayer, RColorBrewer, Matrix, parallel, Seqinfo
Suggests: BiocStyle, HiCDataHumanIMR90, BSgenome.Hsapiens.UCSC.hg18
Reverse dependencies
Suggests Me (3): adjclust, HiCDataHumanIMR90, HiCDCPlus