HVP
Hierarchical Variance Partitioning
Bioconductor version: 3.23 · Package version: 1.2.0
HVP is a quantitative batch effect metric that estimates the proportion of variance associated with batch effects in a data set.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HVP")Details
| Maintainer | Wei Xin Chan <cweixin@gmail.com> |
| Author | Wei Xin Chan [aut, cre] (ORCID: <https://orcid.org/0000-0003-3193-9195>) |
| License | MIT + file LICENSE |
| Downloads rank | 269 |
| Source branch | RELEASE_3_23 |
| biocViews | BatchEffect, GeneExpression, SingleCell, Software, Transcriptomics |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | HVP_1.2.0.tar.gz |
| Windows binary (x86_64) | HVP_1.2.0.zip |
| macOS binary (arm64) | HVP_1.2.0.tgz |
| macOS binary (x86_64) | HVP_1.2.0.tgz |
Dependencies
Imports: Matrix, methods, stats
Suggests: SingleCellExperiment, SummarizedExperiment, Seurat, SeuratObject, ggplot2, progress, testthat, splatter, scater, devtools, knitr, rmarkdown, BiocStyle, ExperimentHub