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GladiaTOX

R Package for Processing High Content Screening data

Bioconductor version: 3.23 · Package version: 1.28.0

GladiaTOX R package is an open-source, flexible solution to high-content screening data processing and reporting in biomedical research. GladiaTOX takes advantage of the tcpl core functionalities and provides a number of extensions: it provides a web-service solution to fetch raw data; it computes severity scores and exports ToxPi formatted files; furthermore it contains a suite of functionalities to generate pdf reports for quality control and data processing.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GladiaTOX")

Details

MaintainerPMP S.A. R Support <DL.RSupport@pmi.com>
AuthorVincenzo Belcastro [aut, cre], Dayne L Filer [aut], Stephane Cano [aut]
LicenseGPL-2
URLhttps://github.com/philipmorrisintl/GladiaTOX
Downloads rank403
Source branchRELEASE_3_23
biocViewsNormalization, Preprocessing, QualityControl, Software, WorkflowStep

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageGladiaTOX_1.28.0.tar.gz
Windows binary (x86_64)GladiaTOX_1.28.0.zip
macOS binary (arm64)GladiaTOX_1.28.0.tgz
macOS binary (x86_64)GladiaTOX_1.28.0.tgz
Dependencies

Depends: R (>= 3.6.0), data.table (>= 1.9.4)

Imports: DBI, RMariaDB, RSQLite, numDeriv, RColorBrewer, parallel, stats, methods, graphics, grDevices, xtable, tools, brew, stringr, RJSONIO, ggplot2, ggrepel, tidyr, utils, RCurl, XML

Suggests: roxygen2, knitr, rmarkdown, testthat, BiocStyle