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GSReg

Gene Set Regulation (GS-Reg)

Bioconductor version: 3.23 · Package version: 1.46.0

A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSReg")

Details

MaintainerBahman Afsari <bahman@jhu.edu>, Elana J. Fertig <ejfertig@jhmi.edu>
AuthorBahman Afsari <bahman@jhu.edu>, Elana J. Fertig <ejfertig@jhmi.edu>
LicenseGPL-2
Downloads rank496
Source branchRELEASE_3_23
biocViewsAlternativeSplicing, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Pathways, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageGSReg_1.46.0.tar.gz
Windows binary (x86_64)GSReg_1.46.0.zip
macOS binary (arm64)GSReg_1.46.0.tgz
macOS binary (x86_64)GSReg_1.46.0.tgz
Dependencies

Depends: R (>= 2.13.1), Homo.sapiens, org.Hs.eg.db, GenomicFeatures, AnnotationDbi

Suggests: GenomicRanges, GSBenchMark