GSReg
Gene Set Regulation (GS-Reg)
Bioconductor version: 3.23 · Package version: 1.46.0
A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSReg") Details
| Maintainer | Bahman Afsari <bahman@jhu.edu>, Elana J. Fertig <ejfertig@jhmi.edu> |
| Author | Bahman Afsari <bahman@jhu.edu>, Elana J. Fertig <ejfertig@jhmi.edu> |
| License | GPL-2 |
| Downloads rank | 496 |
| Source branch | RELEASE_3_23 |
| biocViews | AlternativeSplicing, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Pathways, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GSReg_1.46.0.tar.gz |
| Windows binary (x86_64) | GSReg_1.46.0.zip |
| macOS binary (arm64) | GSReg_1.46.0.tgz |
| macOS binary (x86_64) | GSReg_1.46.0.tgz |
Dependencies
Depends: R (>= 2.13.1), Homo.sapiens, org.Hs.eg.db, GenomicFeatures, AnnotationDbi
Suggests: GenomicRanges, GSBenchMark