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EBImage

Image processing and analysis toolbox for R

Bioconductor version: 3.23 · Package version: 4.54.0

EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBImage")

Details

MaintainerAndrzej Oleś <andrzej.oles@gmail.com>
AuthorAndrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais
LicenseLGPL
URLhttps://github.com/aoles/EBImage
Bug Reportshttps://github.com/aoles/EBImage/issues
Downloads rank3625
Source branchRELEASE_3_23
biocViewsSoftware, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageEBImage_4.54.0.tar.gz
Windows binary (x86_64)EBImage_4.54.0.zip
macOS binary (arm64)EBImage_4.54.0.tgz
macOS binary (x86_64)EBImage_4.54.0.tgz
Dependencies

Depends: methods

Imports: BiocGenerics (>= 0.7.1), graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils, htmltools, htmlwidgets, RCurl

Suggests: BiocStyle, digest, knitr, rmarkdown, shiny

Reverse dependencies

Depends On Me (10): CRImage, cytomapper, DonaPLLP2013, FISHalyseR, flowcatchR, furrowSeg, HD2013SGI, ImageArray, MerfishData, nucim

Imports Me (28): AiES, alabaster.sfe, BioImageDbs, bioimagetools, BioThermR, bnbc, CatsCradle, CONFESS, cytoviewer, FastSegmentation, flowCHIC, heatmaps, imcRtools, LFApp, LOMAR, MoleculeExperiment, ProxReg, RBioFormats, RockFab, SAFARI, simpleSeg, sosta, SpatialFeatureExperiment, spatialGE, SpatialOmicsOverlay, synapsis, xenLite, yamss

Suggests Me (11): aroma.core, cooltools, crownsegmentr, glow, HilbertVis, ijtiff, juicr, lidR, metagear, pliman, Voyager