DNAshapeR

High-throughput prediction of DNA shape features

Bioconductor version: 3.23 · Package version: 1.40.0

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNAshapeR")

Details

Maintainer	Tsu-Pei Chiu <tsupeich@usc.edu>
Author	Tsu-Pei Chiu and Federico Comoglio
License	GPL-2
Downloads rank	654
Source branch	RELEASE_3_23
biocViews	DNA3DStructure, Software, StructuralPrediction

Documentation

Bioconductor Package Vignette

Download

Follow the installation instructions to use this package in your R session.

Source package	DNAshapeR_1.40.0.tar.gz
Windows binary (x86_64)	DNAshapeR_1.40.0.zip
macOS binary (arm64)	DNAshapeR_1.40.0.tgz
macOS binary (x86_64)	DNAshapeR_1.40.0.tgz

Dependencies

Depends: R (>= 3.4), GenomicRanges

Imports: Rcpp (>= 0.12.1), Biostrings, fields

LinkingTo: Rcpp

Suggests: AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret