DECIPHER
Tools for curating, analyzing, and manipulating biological sequences
Bioconductor version: 3.23 · Package version: 3.8.1
A toolset for deciphering and managing biological sequences.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DECIPHER")Details
| Maintainer | Erik Wright <Erik.Wright@bcm.edu> |
| Author | Erik Wright |
| License | GPL-3 |
| URL | http://DECIPHER.codes |
| Downloads rank | 4295 |
| Source branch | RELEASE_3_23 |
| biocViews | Alignment, Clustering, ComparativeGenomics, DataImport, GenePrediction, Genetics, ImmunoOncology, Microarray, Microbiome, Phylogenetics, QualityControl, Sequencing, Software, Visualization, WholeGenome, qPCR |
Documentation
- Classify Sequences in R
- Design Group-Specific FISH Probes in R
- Design Group-Specific Primers in R
- Design Microarray Probes in R
- Design Primers that Yield Group-Specific Signatures
- Detecting Obscure Tandem Repeats in Sequences
- Finding Chimeric Sequences in R
- Getting Started DECIPHERing
- Growing Phylogenetic Trees in R with Treeline
- Population Genetics Inference in R
- Searching Biological Sequences for Research
- The Art of Multiple Sequence Alignment in R
- The Double Life of RNA: Uncovering Non-Coding RNAs
- The Magic of Gene Finding
- Upsize Your Clustering with Clusterize
Download
Follow the installation instructions to use this package in your R session.
| Source package | DECIPHER_3.8.1.tar.gz |
| Windows binary (x86_64) | DECIPHER_3.8.1.zip |
| macOS binary (arm64) | DECIPHER_3.8.1.tgz |
| macOS binary (x86_64) | DECIPHER_3.8.1.tgz |
Dependencies
Depends: R (>= 3.5.0), Biostrings (>= 2.59.1), stats
Imports: methods, DBI, S4Vectors, IRanges, XVector
LinkingTo: Biostrings, S4Vectors, IRanges, XVector
Suggests: RSQLite (>= 1.1)
Reverse dependencies
Depends On Me (3): AssessORF, sangeranalyseR, SynExtend
Imports Me (10): AssessORFData, copyseparator, DspikeIn, ensembleTax, mia, openPrimeR, piglet, scifer, tidyGenR, VIProDesign
Suggests Me (3): microbial, MicrobiotaProcess, MiscMetabar