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CoverageView

Coverage visualization package for R

Bioconductor version: 3.23 · Package version: 1.50.0

This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CoverageView")

Details

MaintainerErnesto Lowy <ernestolowy@gmail.com>
AuthorErnesto Lowy
LicenseArtistic-2.0
Downloads rank547
Source branchRELEASE_3_23
biocViewsChIPSeq, ImmunoOncology, RNASeq, Sequencing, Software, Technology, Visualization

Download

Follow the installation instructions to use this package in your R session.

Source packageCoverageView_1.50.0.tar.gz
macOS binary (arm64)CoverageView_1.50.0.tgz
macOS binary (x86_64)CoverageView_1.50.0.tgz
Dependencies

Depends: R (>= 2.10), methods, Rsamtools (>= 1.19.17), rtracklayer

Imports: S4Vectors (>= 0.7.21), IRanges (>= 2.3.23), GenomicRanges, GenomicAlignments, parallel, tools