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ClusterJudge

Judging Quality of Clustering Methods using Mutual Information

Bioconductor version: 3.23 · Package version: 1.34.0

ClusterJudge implements the functions, examples and other software published as an algorithm by Gibbons, FD and Roth FP. The article is called "Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation" and it appeared in Genome Research, vol. 12, pp1574-1581 (2002). See package?ClusterJudge for an overview.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ClusterJudge")

Details

MaintainerAdrian Pasculescu <a.pasculescu@gmail.com>
AuthorAdrian Pasculescu
LicenseArtistic-2.0
Downloads rank423
Source branchRELEASE_3_23
biocViewsClustering, GO, GeneExpression, Software, StatisticalMethod

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageClusterJudge_1.34.0.tar.gz
Windows binary (x86_64)ClusterJudge_1.34.0.zip
macOS binary (arm64)ClusterJudge_1.34.0.tgz
macOS binary (x86_64)ClusterJudge_1.34.0.tgz
Dependencies

Depends: R (>= 3.6), stats, utils, graphics, infotheo, lattice, latticeExtra, httr, jsonlite

Suggests: yeastExpData, knitr, rmarkdown, devtools, testthat, biomaRt