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ChIPsim

Simulation of ChIP-seq experiments

Bioconductor version: 3.23 · Package version: 1.66.0

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPsim")

Details

MaintainerPeter Humburg <Peter.Humburg@gmail.com>
AuthorPeter Humburg
LicenseGPL (>= 2)
Downloads rank626
Source branchRELEASE_3_23
biocViewsChIPSeq, Infrastructure, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageChIPsim_1.66.0.tar.gz
Windows binary (x86_64)ChIPsim_1.66.0.zip
macOS binary (arm64)ChIPsim_1.66.0.tgz
macOS binary (x86_64)ChIPsim_1.66.0.tgz
Dependencies

Depends: Biostrings (>= 2.29.2)

Imports: IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils

Suggests: actuar, zoo