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ChIPseqR

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: 3.23 · Package version: 1.66.0

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPseqR")

Details

MaintainerPeter Humburg <peter.humburg@gmail.com>
AuthorPeter Humburg
LicenseGPL (>= 2)
Downloads rank686
Source branchRELEASE_3_23
biocViewsChIPSeq, Infrastructure, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageChIPseqR_1.66.0.tar.gz
Windows binary (x86_64)ChIPseqR_1.66.0.zip
macOS binary (arm64)ChIPseqR_1.66.0.tgz
macOS binary (x86_64)ChIPseqR_1.66.0.tgz
Dependencies

Depends: R (>= 2.10.0), methods, BiocGenerics, S4Vectors (>= 0.9.25)

Imports: Biostrings, fBasics, GenomicRanges, IRanges (>= 2.5.14), graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils