ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Bioconductor version: 3.23 · Package version: 1.66.0
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPseqR") Details
| Maintainer | Peter Humburg <peter.humburg@gmail.com> |
| Author | Peter Humburg |
| License | GPL (>= 2) |
| Downloads rank | 686 |
| Source branch | RELEASE_3_23 |
| biocViews | ChIPSeq, Infrastructure, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ChIPseqR_1.66.0.tar.gz |
| Windows binary (x86_64) | ChIPseqR_1.66.0.zip |
| macOS binary (arm64) | ChIPseqR_1.66.0.tgz |
| macOS binary (x86_64) | ChIPseqR_1.66.0.tgz |
Dependencies
Depends: R (>= 2.10.0), methods, BiocGenerics, S4Vectors (>= 0.9.25)
Imports: Biostrings, fBasics, GenomicRanges, IRanges (>= 2.5.14), graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils