CNViz
Copy Number Visualization
Bioconductor version: 3.23 · Package version: 1.20.0
CNViz takes probe, gene, and segment-level log2 copy number ratios and launches a Shiny app to visualize your sample's copy number profile. You can also integrate loss of heterozygosity (LOH) and single nucleotide variant (SNV) data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNViz")Details
| Maintainer | Rebecca Greenblatt <rebecca.greenblatt@gmail.com> |
| Author | Rebecca Greenblatt [aut, cre] |
| License | Artistic-2.0 |
| Downloads rank | 328 |
| Source branch | RELEASE_3_23 |
| biocViews | CopyNumberVariation, DNASeq, Sequencing, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CNViz_1.20.0.tar.gz |
| Windows binary (x86_64) | CNViz_1.20.0.zip |
| macOS binary (arm64) | CNViz_1.20.0.tgz |
| macOS binary (x86_64) | CNViz_1.20.0.tgz |
Dependencies
Depends: R (>= 4.0), shiny (>= 1.5.0)
Imports: dplyr, stats, utils, grDevices, plotly, karyoploteR, CopyNumberPlots, GenomicRanges, magrittr, DT, scales, graphics