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BridgeDbR

Code for using BridgeDb identifier mapping framework from within R

Bioconductor version: 3.23 · Package version: 2.22.0

Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BridgeDbR")

Details

MaintainerEgon Willighagen <egon.willighagen@gmail.com>
AuthorChrist Leemans <christleemans@gmail.com>, Egon Willighagen <egon.willighagen@gmail.com>, Denise Slenter, Anwesha Bohler <anweshabohler@gmail.com>, Lars Eijssen <l.eijssen@maastrichtuniversity.nl>, Tooba Abbassi-Daloii
LicenseAGPL-3
URLhttps://github.com/bridgedb/BridgeDbR
Bug Reportshttps://github.com/bridgedb/BridgeDbR/issues
Downloads rank518
Source branchRELEASE_3_23
biocViewsAnnotation, Cheminformatics, Metabolomics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageBridgeDbR_2.22.0.tar.gz
Windows binary (x86_64)BridgeDbR_2.22.0.zip
macOS binary (arm64)BridgeDbR_2.22.0.tgz
macOS binary (x86_64)BridgeDbR_2.22.0.tgz
Dependencies

Depends: R (>= 3.3.0), rJava

Imports: curl

Suggests: BiocStyle, knitr, rmarkdown, testthat