Bioc2026 Registration Open!

BiocBook

Write, containerize, publish and version Quarto books with Bioconductor

Bioconductor version: 3.23 · Package version: 1.10.0

A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocBook")

Details

MaintainerJacques Serizay <jacquesserizay@gmail.com>
AuthorJacques Serizay [aut, cre]
LicenseMIT + file LICENSE
URLhttps://bioconductor.org/packages/BiocBook
Bug Reportshttps://github.com/js2264/BiocBook/issues
Downloads rank353
Source branchRELEASE_3_23
biocViewsInfrastructure, ReportWriting, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageBiocBook_1.10.0.tar.gz
Windows binary (x86_64)BiocBook_1.10.0.zip
macOS binary (arm64)BiocBook_1.10.0.tgz
macOS binary (x86_64)BiocBook_1.10.0.tgz
Dependencies

Depends: R (>= 4.3)

Imports: BiocGenerics, pak, cli, glue, gert, gh, gitcreds, httr, usethis, dplyr, purrr, tibble, methods, rprojroot, stringr, yaml, tools, utils, rlang, quarto, renv

Suggests: BiocStyle, knitr, testthat (>= 3.0.0), rmarkdown