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BiocBaseUtils

Utility and internal functions for Bioconductor packages

Bioconductor version: 3.23 · Package version: 1.14.2

The package coalesces typical helper functions that are scattered throughout the Bioconductor ecosystem. It aims to reduce code redundancy by formalizing functions often used by Bioconductor developers. These functions include operations such as replacing slots in an object, selecting observations for show methods, labeling function life cycles, and more.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocBaseUtils")

Details

MaintainerMarcel Ramos <marcel.ramos@sph.cuny.edu>
AuthorMarcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>), Martin Morgan [ctb], Hervé Pagès [ctb]
LicenseArtistic-2.0
URLhttps://www.github.com/Bioconductor/BiocBaseUtils
Bug Reportshttps://www.github.com/Bioconductor/BiocBaseUtils/issues
Downloads rank14005
Source branchRELEASE_3_23
biocViewsInfrastructure, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageBiocBaseUtils_1.14.2.tar.gz
Windows binary (x86_64)BiocBaseUtils_1.14.2.zip
macOS binary (arm64)BiocBaseUtils_1.14.2.tgz
macOS binary (x86_64)BiocBaseUtils_1.14.2.tgz
Dependencies

Depends: R (>= 4.5.0)

Imports: methods, utils

Suggests: knitr, rmarkdown, BiocStyle, tinytest

Reverse dependencies

Imports Me (30): AlphaMissenseR, AnnotationHub, AnVIL, AnVILAz, AnVILGCP, AnVILPublish, Bioc.gff, BiocCheck, BiocFHIR, BiocPkgDash, cBioPortalData, DNAfusion, GCPtools, GenomicFiles, GraphExperiment, HistoImagePlot, imageFeatureTCGA, imageTCGAutils, iSEEfier, looking4clusters, MultiAssayExperiment, RaggedExperiment, scGraphVerse, SingleCellMultiModal, TCGAutils, TENxIO, UniProt.ws, VisiumIO, visiumStitched, XeniumIO

Suggests Me (1): scifer