BioCor

Functional Similarities

Bioconductor version: 3.23 · Package version: 1.36.0

Calculates functional similarities based on the pathways described on KEGG and REACTOME or in gene sets. These similarities can be calculated for pathways or gene sets, genes, or clusters and combined with other similarities. They can be used to improve networks, gene selection, testing relationships...

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioCor")

Details

Maintainer	Lluís Revilla Sancho <lluis.revilla@gmail.com>
Author	Lluís Revilla Sancho [aut, cre] (ORCID: <https://orcid.org/0000-0001-9747-2570>), Pau Sancho-Bru [ths] (ORCID: <https://orcid.org/0000-0001-5569-9259>), Juan José Salvatella Lozano [ths] (ORCID: <https://orcid.org/0000-0001-7613-3908>)
License	MIT + file LICENSE
URL	https://bioconductor.org/packages/BioCor, https://biocor.llrs.dev
Bug Reports	https://github.com/llrs/BioCor/issues
Downloads rank	551
Source branch	RELEASE_3_23
biocViews	Clustering, GeneExpression, Network, NetworkEnrichment, Pathways, Software, StatisticalMethod, SystemsBiology

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source package	BioCor_1.36.0.tar.gz
Windows binary (x86_64)	BioCor_1.36.0.zip
macOS binary (arm64)	BioCor_1.36.0.tgz
macOS binary (x86_64)	BioCor_1.36.0.tgz

Dependencies

Depends: R (>= 4.4)

Imports: BiocParallel, GSEABase, Matrix, methods

Suggests: airway, BiocStyle, boot, DESeq2, ggplot2 (>= 3.4.1), GOSemSim, Hmisc, knitr (>= 1.43), org.Hs.eg.db, reactome.db, rmarkdown, spelling, testthat (>= 3.1.5), WGCNA