AllelicImbalance
Investigates Allele Specific Expression
Bioconductor version: 3.23 · Package version: 1.50.0
Provides a framework for allelic specific expression investigation using RNA-seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AllelicImbalance")Details
| Maintainer | Jesper R Gadin <j.r.gadin@gmail.com> |
| Author | Jesper R Gadin, Lasse Folkersen |
| License | GPL-3 |
| URL | https://github.com/pappewaio/AllelicImbalance |
| Bug Reports | https://github.com/pappewaio/AllelicImbalance/issues |
| Downloads rank | 694 |
| Source branch | RELEASE_3_23 |
| biocViews | Genetics, Infrastructure, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | AllelicImbalance_1.50.0.tar.gz |
| Windows binary (x86_64) | AllelicImbalance_1.50.0.zip |
| macOS binary (arm64) | AllelicImbalance_1.50.0.tgz |
| macOS binary (x86_64) | AllelicImbalance_1.50.0.tgz |
Dependencies
Depends: R (>= 4.0.0), grid, GenomicRanges (>= 1.31.8), SummarizedExperiment (>= 0.2.0), GenomicAlignments (>= 1.15.6)
Imports: methods, BiocGenerics, AnnotationDbi, BSgenome (>= 1.47.3), VariantAnnotation (>= 1.25.11), Biostrings (>= 2.47.6), S4Vectors (>= 0.17.25), IRanges (>= 2.13.12), Rsamtools (>= 1.99.3), GenomicFeatures (>= 1.31.3), Gviz, lattice, latticeExtra, gridExtra, seqinr, GenomeInfoDb, nlme
Suggests: testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP144.GRCh37, BiocStyle, knitr, rmarkdown