Aerith
visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics
Bioconductor version: 3.23 · Package version: 1.0.1
Visualisation of peptide isotopic peaks and SIP peptide spectra match (PSM). Filtration of high quality PSM. Accurate isotopic abundance calculation of peptide and metabolites. Visualisation of SIP proteomics results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Aerith")Details
| Maintainer | Yi Xiong <yixiong@ou.edu> |
| Author | Yi Xiong [aut, cre] (ORCID: <https://orcid.org/0009-0005-4591-2366>) |
| License | GPL-3 |
| URL | https://github.com/xyz1396/Aerith |
| Bug Reports | https://github.com/xyz1396/Aerith/issues |
| System Requirements | C++17 |
| Downloads rank | 205 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, MassSpectrometry, Metabolomics, Proteomics, QualityControl, Software, Visualization |
Documentation
- Aerith
- Input Data Format and File Handling in Aerith
- PSM Annotation and Visualization
- Score function test of PSM
- Theoretic spectra generation of SIP-labeled compound
- Theoretic spectra generation of SIP-labeled peptide
- Visualization of SIP proteomic result
Download
Follow the installation instructions to use this package in your R session.
| Source package | Aerith_1.0.1.tar.gz |
| Windows binary (x86_64) | Aerith_1.0.1.zip |
| macOS binary (arm64) | Aerith_1.0.1.tgz |
| macOS binary (x86_64) | Aerith_1.0.1.tgz |