scDiagnostics-package	scDiagnostics-package
.getAvailableCoefficients	dot-getAvailableCoefficients
adjustPValues	adjustPValues
argumentCheck	argumentCheck
boxplotPCA	boxplotPCA
calculateAveragePairwiseCorrelation	calculateAveragePairwiseCorrelation
calculateCategorizationEntropy	calculateCategorizationEntropy
calculateCellDistances	calculateCellDistances
calculateCellDistancesSimilarity	calculateCellDistancesSimilarity
calculateCellSimilarityPCA	calculateCellSimilarityPCA
calculateCramerPValue	calculateCramerPValue
calculateDiscriminantSpace	calculateDiscriminantSpace
calculateEntropy	calculateEntropy
calculateGraphIntegration	calculateGraphIntegration
calculateHotellingPValue	calculateHotellingPValue
calculateHVGOverlap	calculateHVGOverlap
calculateMMDPValue	calculateMMDPValue
calculateSIRSpace	calculateSIRSpace
calculateTopLoadingGeneShifts	calculateTopLoadingGeneShifts
calculateVarImpOverlap	calculateVarImpOverlap
calculateWassersteinDistance	calculateWassersteinDistance
compareMarkers	compareMarkers
comparePCA	comparePCA
comparePCASubspace	comparePCASubspace
computeMMDStatistic	computeMMDStatistic
conditionalMeans	conditionalMeans
convertColumnsToCharacter	convertColumnsToCharacter
decomposeR2	decomposeR2
detectAnomaly	detectAnomaly
downsampleSCE	downsampleSCE
extractGeneOrder	extractGeneOrder
generateColors	generateColors
histQCvsAnnotation	histQCvsAnnotation
hotellingT2	hotellingT2
inverseNormalTransformation	inverseNormalTransformation
ledoitWolf	ledoitWolf
nElements	nElements
plot.calculateAveragePairwiseCorrelationObject	calculateAveragePairwiseCorrelation
plot.calculateCellDistancesObject	calculateCellDistances
plot.calculateCellSimilarityPCAObject	calculateCellSimilarityPCA
plot.calculateDiscriminantSpaceObject	calculateDiscriminantSpace
plot.calculateGraphIntegrationObject	calculateGraphIntegration
plot.calculateSIRSpaceObject	calculateSIRSpace
plot.calculateTopLoadingGeneShiftsObject	calculateTopLoadingGeneShifts
plot.calculateWassersteinDistanceObject	calculateWassersteinDistance
plot.compareMarkersObject	compareMarkers
plot.comparePCAObject	comparePCA
plot.comparePCASubspaceObject	comparePCASubspace
plot.detectAnomalyObject	detectAnomaly
plot.regressPCObject	regressPC
plotBarplot	plotBarplot
plotBoxplot	plotBoxplot
plotCellTypeMDS	plotCellTypeMDS
plotCellTypePCA	plotCellTypePCA
plotCoefficientHeatmap	plotCoefficientHeatmap
plotGeneExpressionDimred	plotGeneExpressionDimred
plotGeneSetScores	plotGeneSetScores
plotHeatmap	plotHeatmap
plotMarkerExpression	plotMarkerExpression
plotPairwiseDistancesDensity	plotPairwiseDistancesDensity
plotQCvsAnnotation	plotQCvsAnnotation
plotRSquared	plotRSquared
plotVarianceContribution	plotVarianceContribution
processGenesSimple	processGenesSimple
processPCA	processPCA
projectPCA	projectPCA
projectSIR	projectSIR
qc_data	qc_data
query_data	query_data
reference_data	reference_data
regressFastCustom	regressFastCustom
regressPC	regressPC
scDiagnostics	scDiagnostics-package
selectCellTypes	selectCellTypes
