IGBLAST_ROOT            Use an external IgBLAST installation
J_alleles-inspect       Basic inspection of J allele sequences
OAS-utils               Download and manipulate OAS data
V_alleles-inspect       Basic inspection of V allele sequences
allele2gene             Go from germline gene allele names to germline
                        gene names
augment_germline_db     Add novel gene alleles to a germline db
auxdata-IO              Read/write IgBLAST auxiliary data files
auxdata-utils           Access IgBLAST auxiliary data
combine_germline_dbs    Combine two existing germline dbs
compute_V_gene_delineations
                        Compute V gene delineations
compute_auxdata         Compute IgBLAST auxiliary data
download_IMGT_germline_sequences
                        Download germline sequences from IMGT
download_OGRDB_germline_json
                        Download AIRR-C JSON files from OGRDB
download_OGRDB_germline_sequences
                        Download germline sequences from OGRDB
get_igblast_root        Control IgBLAST installation to use
igblast_info            Check IgBLAST used by igblastr
igblastn                BLAST for BCR/Ig and TCR sequences
igblastr_usage_report   Turn "Usage Reporting" on or off
igbrowser               Display annotated BCR sequences in a browser
install_IMGT_germline_db
                        Install a germline db from IMGT
install_custom_germline_db
                        Install a germline db from user-supplied gene
                        allele sequences
install_igblast         Install IgBLAST
intdata-utils           Access IgBLAST internal data
list_c_region_dbs       List cached C-region dbs
list_germline_dbs       List cached germline dbs
ndm_data-IO             Read/write "ndm" files
parse_imgt_fasta_headers
                        Parse IMGT FASTA headers
read_igblastn_AIRR_output
                        igblastn output format 19 (AIRR format)
read_igblastn_fmt7_output
                        igblastn output format 7
reset_c_region_dbs      Reset the cached C-region dbs
reset_germline_dbs      Reset the cached germline dbs
summarizeMismatches     Summarize mismatches and indels between query
                        and germline sequences
translate_codons        Extract and translate codons from a set of DNA
                        sequences
update_live_igdata      Update and manage IgBLAST auxiliary and
                        internal data
use_c_region_db         Select cached C-region db to use with
                        igblastn()
use_germline_db         Select cached germline db to use with
                        igblastn()
