Package: comapr
Title: Crossover analysis and genetic map construction
Version: 1.15.1
Authors@R: 
    person(given = "Ruqian",
           family = "Lyu",
           role = c("aut", "cre"),
           email = "xiaoru.best@gmail.com",
           comment = c(ORCID = "0000-0002-7736-6612"))
Description: comapr detects crossover intervals for single gametes from
        their haplotype states sequences and stores the crossovers in
        GRanges object. The genetic distances can then be calculated
        via the mapping functions using estimated crossover rates for
        maker intervals. Visualisation functions for plotting
        interval-based genetic map or cumulative genetic distances are
        implemented, which help reveal the variation of crossovers
        landscapes across the genome and across individuals.
biocViews: Software, SingleCell, Visualization, Genetics
Depends: R (>= 4.1.0)
Imports: methods, ggplot2, reshape2, dplyr, gridExtra, plotly,
        circlize, rlang, GenomicRanges, IRanges, foreach, BiocParallel,
        GenomeInfoDb, scales, RColorBrewer, tidyr, S4Vectors, utils,
        Matrix, grid, stats, SummarizedExperiment, plyr, Gviz
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.3
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), statmod
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-01-26 23:57:06 UTC
RemoteUrl: https://github.com/bioc/comapr
RemoteRef: HEAD
RemoteSha: 7df6a18456a7a8150ac162bd79a4b08da9016157
NeedsCompilation: no
Packaged: 2026-02-26 04:33:13 UTC; root
Author: Ruqian Lyu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7736-6612>)
Maintainer: Ruqian Lyu <xiaoru.best@gmail.com>
Built: R 4.6.0; ; 2026-02-26 04:35:46 UTC; windows
