Type: Package
Package: ReactomeGSA
Title: Client for the Reactome Analysis Service for comparative
        multi-omics gene set analysis
Version: 1.25.0
Authors@R: 
    person("Johannes", "Griss", , "johannes.griss@meduniwien.ac.at", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2206-9511"))
Author: Johannes Griss [aut, cre]
        (<https://orcid.org/0000-0003-2206-9511>)
Maintainer: Johannes Griss <johannes.griss@meduniwien.ac.at>
Description: The ReactomeGSA packages uses Reactome's online analysis
        service to perform a multi-omics gene set analysis. The main
        advantage of this package is, that the retrieved results can be
        visualized using REACTOME's powerful webapplication.  Since
        Reactome's analysis service also uses R to perfrom the actual
        gene set analysis you will get similar results when using the
        same packages (such as limma and edgeR) locally.  Therefore, if
        you only require a gene set analysis, different packages are
        more suited.
License: MIT + file LICENSE
URL: https://github.com/reactome/ReactomeGSA
BugReports: https://github.com/reactome/ReactomeGSA/issues
Imports: Biobase, BiocSingular, dplyr, ggplot2, gplots, httr, igraph,
        jsonlite, methods, progress, RColorBrewer,
        SummarizedExperiment, tidyr
Suggests: devtools, knitr, ReactomeGSA.data, rmarkdown, scater, scran,
        scRNAseq, scuttle, Seurat (>= 3.0), SingleCellExperiment,
        testthat
VignetteBuilder: knitr
biocViews: GeneSetEnrichment, Proteomics, Transcriptomics,
        SystemsBiology, GeneExpression, Reactome
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:54:21 UTC
RemoteUrl: https://github.com/bioc/ReactomeGSA
RemoteRef: HEAD
RemoteSha: 473b5b6230c56a020727bb1a2071cd13988dd63c
NeedsCompilation: no
Packaged: 2025-10-30 09:41:05 UTC; root
Built: R 4.6.0; ; 2025-10-30 09:45:30 UTC; windows
