LipidNeg                MetaboAnnotatoR Lipid Negative fragment
                        libraries
LipidPos                MetaboAnnotatoR Lipid Positive fragment
                        libraries
MetabolitesNeg          MetaboAnnotatoR Metabolite Negative fragment
                        libraries
MetabolitesPos          MetaboAnnotatoR Metabolite Positive fragment
                        libraries
RC                      Pseudo-MS/MS spectra from MESA Lipid Positive
                        LC-MS serum samples
RCspec                  Get RAMClustR pseudo-MS/MS spectra (cluster).
acetaminophen           MetaboAnnotatoR fragment database entry for
                        Acetaminophen Positive mode
annotateAIF             Annotate features from LC-MS AIF raw
                        chromatograms
annotateRC              Annotate features from LC-MS AIF datasets
                        processed with RAMClustR
checkIsotope            Isotopologue type determination
compFrag                Match (pseudo-)MS/MS spectra ions to library
                        fragments
genFragEntry            Generate a fragment library entry
getPseudoMSMS           Obtain pseudo-MS/MS spectra for an LC-MS
                        feature of interest
mspToLib                Generate metabolite entries from MS/MS spectra
                        (.msp files)
plotResultSpec          Plot pseudo-MS/MS composed of candidate matched
                        ions
pseudoMSMS              MetaboAnnotatoR-generated example pseudoMSMS
                        spectrum and related data
rCandidates             MetaboAnnotatoR-generated example of ranked
                        annotation candidates
rankScore               Rank candidate metabolite annotations by score
saveAnnotations         Save annotation results
searchLib               Search candidate metabolites from the fragments
                        libraries
xcmsSpec                Extract the low- and high-collision-energy
                        spectra from XCMS object (from AIF data)
xset                    MESA cohort subset Lipid Positive LC-MS samples
                        processed using XCMS
