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## </script>The DAPAR and Prostar packages are a series
of software dedicated to the processing of proteomics data. More
precisely, they are devoted to the analysis of quantitative datasets
produced by bottom-up discovery proteomics experiments with a LC-MS/MS
pipeline (Liquid Chromatography and Tandem Mass spectrometry).
DAPAR (Differential Analysis of Protein Abundance with R)
is an R package that contains all the necessary functions to process the
data in command lines. It can be used on its own; or as a complement to
the numerous Bioconductor packages () it is compliant with; or through
the Prostar interface. Prostar (Proteomics
statistical analysis with R) is a web interface based on Shiny
technology () that provides GUI (Graphical User Interfaces) to all the
DAPAR functionalities, so as to guide any practitioner that
is not comfortable with R programming through the complete quantitative
analysis process. The experiment package DAPARdata contains
many datasets that can be used as examples.
## R version 4.5.3 (2026-03-11)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Etc/UTC
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] BiocStyle_2.39.0
##
## loaded via a namespace (and not attached):
## [1] digest_0.6.39 R6_2.6.1 fastmap_1.2.0
## [4] xfun_0.57 maketools_1.3.2 cachem_1.1.0
## [7] knitr_1.51 htmltools_0.5.9 rmarkdown_2.31
## [10] buildtools_1.0.0 lifecycle_1.0.5 cli_3.6.6
## [13] sass_0.4.10 jquerylib_0.1.4 compiler_4.5.3
## [16] sys_3.4.3 tools_4.5.3 bslib_0.10.0
## [19] evaluate_1.0.5 yaml_2.3.12 otel_0.2.0
## [22] BiocManager_1.30.27 jsonlite_2.0.0 rlang_1.2.0