# Generated by roxygen2: do not edit by hand

S3method(attachCellScores,Seurat)
S3method(attachCellScores,SingleCellExperiment)
S3method(attachCellScores,default)
S3method(attachCellScores,dgCMatrix)
S3method(attachCellScores,matrix)
S3method(expMat,Seurat)
S3method(expMat,SingleCellExperiment)
S3method(expMat,default)
S3method(expMat,dgCMatrix)
S3method(expMat,matrix)
export(attachCellScores)
export(basicHeatmap)
export(breakWeakTies)
export(cellDistribution)
export(cellSetsOverlaps)
export(expMat)
export(featureWes)
export(geneRadialPlot)
export(generateOverlaps)
export(getPairs)
export(overlapCutoffPlot)
export(overlapGenes)
export(overlapNetworkPlot)
export(overlapPairs)
export(percentileSets)
export(processOverlaps)
export(qGrab)
export(runCSOA)
export(scoreCells)
export(scoreModules)
importFrom(Seurat,"Idents<-")
importFrom(Seurat,FeaturePlot)
importFrom(SeuratObject,LayerData)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(bayesbio,jaccardSets)
importFrom(dplyr,count)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(henna,centerTitle)
importFrom(henna,connectedComponents)
importFrom(henna,hullPlot)
importFrom(henna,networkPlot)
importFrom(henna,radialPlot)
importFrom(kerntools,minmax)
importFrom(methods,is)
importFrom(qs2,qs_read)
importFrom(qs2,qs_save)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(spatstat.utils,revcumsum)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(textshape,cluster_matrix)
importFrom(wesanderson,wes_palette)
