Package: topGO
Type: Package
Title: Enrichment Analysis for Gene Ontology
Version: 2.63.0
Date: 2025-06-23
Authors@R: 
  c(
    person(
      given = "Adrian", family = "Alexa", role = c("aut"),
      email = "adrian.alexa@gmail.com"
    ),
    person(
      given = "Jörg", family = "Rahnenführer", role = c("aut")
    ),
    person(
      given = "Federico", family = "Marini", role = c("cre"), 
      email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
    )
  )
Description: topGO package provides tools for testing GO terms while
        accounting for the topology of the GO graph. Different test
        statistics and different methods for eliminating local
        similarities and dependencies between GO terms can be
        implemented and applied.
License: LGPL
Encoding: UTF-8
Depends: R (>= 2.10.0), methods, BiocGenerics (>= 0.13.6), graph (>=
        1.14.0), Biobase (>= 2.0.0), GO.db (>= 2.3.0), AnnotationDbi
        (>= 1.7.19), SparseM (>= 0.73)
Imports: lattice, matrixStats, DBI
Suggests: ALL, hgu95av2.db, hgu133a.db, genefilter, multtest,
        Rgraphviz, globaltest, knitr, BiocStyle, rmarkdown
Collate: AllClasses.R topGOmethods.R topGOgraph.R topGOalgo.R
        topGOfunctions.R topGOannotations.R topGOtests.R topGOviz.R
        zzz.R
VignetteBuilder: knitr
URL: https://github.com/federicomarini/topGO
BugReports: https://github.com/federicomarini/topGO/issues
biocViews: GeneExpression, Transcriptomics, GeneSetEnrichment, GO,
        Annotation, Pathways, SystemsBiology, Microarray, Sequencing,
        Visualization, Software
Config/pak/sysreqs: libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 13:59:04 UTC
RemoteUrl: https://github.com/bioc/topGO
RemoteRef: HEAD
RemoteSha: 35ec42926dfa093d263fb8af96904521522bbe8c
NeedsCompilation: no
Packaged: 2026-02-03 09:36:08 UTC; root
Author: Adrian Alexa [aut],
  Jörg Rahnenführer [aut],
  Federico Marini [cre] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Federico Marini <marinif@uni-mainz.de>
Built: R 4.6.0; ; 2026-02-03 10:15:43 UTC; unix
